This is quite the long one, so I'll start with the summary - having less than perfect hinge designs on rc planes seems to basically not matter. The difference is so small as to be negligible between a carefully designed faired in hinge and something a lot sharper like what you see on most foam planes. Making nice looking hinges is mostly an aesthetic thing it turns out.
With my Ghost design nearing being ready to fly, it's time to start shifting this project back into high gear. So long as the Ghost performs the way I expect, I'll have as much testing and background on this design as I'm likely to get - the ghost uses a similar inlet and duct design, identical main gear, and the same laminar flow airfoil in a plane that should be heavier than the super duper sabre but with less thrust.
One thing I hadn't investigated until now is flap/control surface hinge design. In most of my earlier designs I used a very simple design where the wing had a sharp back. This works quite well and I haven't really had any issues. The one possible exception is with my Saab 105 where the flaps felt like they didn't really do much, but I didn't know if that was due to the hinges. My working theory was that the slots might actually slightly increase the effectiveness.
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And in my newer designs, I've used a design where the hinge is intended to be smoother and disrupt the airflow less. I didn't have any data to support this being better.
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So, I ran a simulation to get the data, for the smooth and sharp hinges with a clark Y airfoil, and for the smooth hinge for the laminar flow airfoil in this project (the Clark Y gave me enough data to know I wouldn't be using a sharp hinge on this plane since it is very slightly draggier but it's still good to know for the future since it's easier to model the sharp hinge). The clark Y flap is hinged at 22% of the chord from the back and the laminar flow airfoil at 20% of the chord from the back.
The answer turns out to be that the sharp hinge is slightly draggier and produces a tiny bit less lift, especially at higher angles of attack. Cy is the Clark Y, and IW is the laminar flow airfoil. S is the sharp hinge, M is the smooth hinge, and no letter is the base airfoil. If it has 45 at the end, the flap is deflected 45 degrees. The Y axis is the coefficient of lift or drag and the X axis the angle of attack in degrees.
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What seems to be happening is that while the sharp edge does cause flow separation, the control surfaces are far enough back that the airflow is already pretty turbulent anyway. A tiny bit of lift is lost and drag added, but it's so small as to be unimportant. You also get a tiny reduction in nose down pitching moment with the sharp hinge which is an improvement in most use cases but again the change is minimal. You can see the boundary layer is already turbulent and slow by the arrow on the Clark Y airfoil.
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So less than perfect hinges have minimal impact for most planes. The broader conclusion from this is that it's not really worth the time except for possibly in terms of looks.
This analysis also incidentally further confirms my choice of the laminar flow airfoil for the wing - both on the super duper sabre and the Ghost - lift is 19% lower with full flaps but drag is 30% lower which means that for a given stall speed, a wing with the laminar flow airfoil will be faster taking flaps into account.