Easiest way to do that would a pluggable high voltage lead that you have to put next to the last cell before charging. Another option would be "blind plugs" that just bridge the empty cells.
But there's one thing that would not work, adding a cell later while the others are already charging.
Does that work on your boards?
Or is it still better to have a single charger for each port?
Blind plugs and multiple alternate power connections all introduce their own issues. It's not insurmountable, but as I said, it makes the connections a little odd. With the 2x3S harness, I've got a power connector and 6S balance plug going to the charger and 2 balance sockets to the battery. Very clean, but again, it won't work for one. It must have both.
I've seen matching 2x2S harnesses, but I've yet to see a 3x2S series harness sold and I doubt I ever will -- with the 2 battery harness if I don't have two packs I can just unplug the harness and charge one directly. With a 3x2S if I only have two to charge, I can't revert back cleanly to charging two, I have to charge the two individually. with a 6x1S serial charger, not only would I need something complicated or 6 batteries . . . I can't even do away with the harness and charge the pack directly -- I'd need yet another harness to charge only one. With the parallel harness with onboard self protect I can charge 1 to 6 with no complicated setup.
I generally don't interrupt a charge cycle without completely stopping it and restarting it fresh, at which point you're back to the original problem of paralleling unblanced packs, which the "fuses" on the board should deal with.
Single charger for each pack ( in one box or just many plugged into a beefy hub) will always be the better option, electrically, but that assumes the economics are not considered.