Here's the thing about wind at ground level... That's not where planes is fly.
In all seriousness though, as you go up in elevation you can have significant changes in wind speed or direction. And any obstacles; houses, trees, hills, cars, etc, that the wind has to travel around will cause some amount of turbulence. Flying between the hills like you were, you were probably standing in, essentially, a puddle of calm air. Picture a puddle of water, and some wind blowing over the surface. What do you get? Waves.
If the wind was blowing faster above that puddle of calm air you were standing in you would get waves where the faster and slower air intersect, ie, turbulence.
Without being there to experience it, it's hard to say what effect the wind/weather conditions had on your flying, but I would not be surprised if you went out on another no-wind day and the plane would fly normally again.