On the canopy, I started from the back and work forward but NOT attached to the base. Then take the base and make sure it fits in the space with the correct angles in the fuselage - glue the score cuts so that it matches those angles. Lastly, attach the canopy to the canopy base, first the front, then the back - then evenly on both sides, but do not worry about what hangs down below the canopy base. When it is cool, cut the excess of the canopy all around the base.
For the turtle deck, attach the front angle piece to the turtle deck base. Then attach the turtle deck to the top of base starting at the front. Wrap the edges down, glue, then cut off the excess below the base. Then attach it to the fuselage.