RTFQ does have their own version of APM both 2.5 and 2.6:
2.5.2:
http://witespyquad.gostorego.com/flight-controllers/readytoflyer-2-5-287.html
2.6:
http://witespyquad.gostorego.com/flight-controllers/readytoflyer-2-6.html
The big difference is the 2.6 has the mag moved to the GPS instead of on the main board to help eliminate interference.
You'll have to go into the options and add the GPS and such which is why the initial listing price is lower than what you were probably looking for.
Honestly the official APM hardware is IMHO overpriced. It's basically an arduino mega with a few sensors integrated. Not very different from a MW Mega which is also based on an Arduino Mega. They both use the same processor they just set things up differently. It's one of the big reasons I've never been a fan of APM.
However it sounds like development on APM is more or less dying off now as they've maxed out the memory on the chip and are moving to the PixHawk for future development.
Personally I'm just not a fan of the community around APM. But that's just me, plenty of people love it. I've just found the MW and Tau communities far more pleasurable to take part in.
The hardware from RTFQ is fairly good - but he has some questionable business practices that make it hard for me to recommend doing business with him. From poor communication to slow shipping to cloning hardware that isn't released under open licenses (The Quanton for example) and just generally not playing very nice with the core developers of those who do release things under open licenses. I ordered from him once and was happy with the quality of the hardware - but one small item was missing from my order and he failed to respond to two attempts to contact him by e-mail about it which has left me in no big hurry to order from him again.
I haven't tried APM personally but most of the reports I've seen sound like it's great if you want the quad to do most of the flying for you, but not so great if you want to be able to fly it aggressively in a manual or slightly assisted mode. MW (And Naze) is great if you want to fly manually or slightly assisted - but not if you want it to any level of autonomous flight.
Honestly I'm absolutely loving Tau. I haven't used an official Tau board yet but I rolled my own using an STM32F4 discovery development board and adding my own sensors. I did run into a few minor issues and it did require some hacking of the code - but the Tau team was very helpful and responsive even though I was working with "unsupported" hardware. Tau's software has blown me away. Their manual modes feel just as good to me as MW/Naze (and they recently added a direct clone of the MW/Naze Rate mode to compliment their own manual mode but I haven't had a chance to try it just yet), and their assisted modes work WAY better than MW/Naze. I'm using the same exact sensors I used on my MW Mega and with no tuning the Tau board does altitude and position hold better than I ever got MW/Naze to with extensive tuning. I don't even have any foam over my baro sensor yet and it will hold altitude within a foot or two using my own BMP085 sensor which is way less sensitive than the one used on the Naze. The autotune on Tau is also very impressive and blew me away with how easy it was to use and how good of a tune it gave me on my knuckle quad.
The big issue with Tau is hardware availability. The Sparky is a F3 based board with some limitations if you're wanting to do autonomous flight. It's still way better than the Naze but not as good as the Quanton or the not yet available Sparky2. The Quanton is a great board based on the STM32F4 and the official Tau reference platform - but it's a big bigger than the "standard" 35mm square of most other small FC's and it's only available from Germany (the RTFQ version is an unauthorized clone produced in violation of the license the Quanton design was released under.)