Tail Feathers
Start with the horizontal stabilizer. Get most of the perimeter and the counterbalance slots cut out, then transfer the green reference marks to the back of the sheet and cut the elevator hinges, making sure to only do so between the counterbalances. Cut a 45-bevel towards the elevator on both sides and reinforce the hinges with hot glue. Give the leading edges a nice wide bevel, then inlay two bamboo barbeque skewers. Finally, fold the halves of the elevator over, positioning the fold to minimize binding of the control surface.
Next, cut out the two rudder pieces. Like with the elevator, transfer the reference marks to the back and score-cut the rudder hinge lines on the opposite side, making sure to leave the counterbalance uncut. Bevel the control surfaces and reinforce them with hot glue. Then, glue the center of the rudder onto one half, aligning with the scored line and slot in the vStab skin. Glue the skin over the rudder, making sure the airfoil profile stays somewhat symmetric while keeping binding to a minimum.
Finally, slot the horizontal stabilizer into the vertical and install the tail servos. I recommend something beefier than your standard 9g to deal with the stiffer hinges and large surfaces, here I'm using a pair of EMAX ES09MD IIs: Digital, metal-gear servos with torque around 2.5kg*cm (35 oz*in). I kept the seam of the hStab on the bottom, though I'm not sure it makes much of a difference. You can also fill in the slot in the rudder that was used to make clearance during installation of the horizontal.
Rear Empennage
Laminate the formers shown below and build up the supporting structure for the servo which will actuate the upper gear door. In general, try to remove paper between laminated formers: This keeps weight down and reduces the potential for them to debond under loading perpendicular to the surface. Note that the slotted cutout on the bottom of the wide former is on the same side as this servo mount.
Next, install the formers onto the tailfeather assembly as shown. The hole in the smaller should be on the left as viewed from behind the tail looking forwards. Now is also a good time to install the pushrod, control horn, and pushrod guide for the elevator. The latter is not included in the plans, just a simple strip of foam which zip-ties are embedded into. This prevents the control rod from flexing under up-elevator load.
Prepare the two aft empennage / tailcone skins as shown below. Install the fore one first, taking care around the servo and vStab leading edge root, then test-fit the aft skin. Take note of where the rudder pushrod ends up, then install a pushrod guide in similar fashion to the elevator. Test-fit the control horn, then pass the pushrod through the skin and glue it on, installing the control horn later.
Fuselage
Start off with the three rear fuselage formers and the two locating nibs. Fold the tabs up on the one former - these help to constrain and align the lower cargo bay door / ramp - then laminate the other two. The oval cutout is at the top of each former. Push the locating nibs into the hole and put the former with the folded-up tabs onto the side where it is the lowest relative to the other formers: The former on the opposite side from the tabbed former should be offset up.
Next, laminate the partial fore former with the fore former itself, and cut out the main fuselage skin. Install the fore former at the front of the skin, at the lowered section, with the partial former facing aft: this is used to locate the hatch later, the nose will join to the front of the fore former - the former should be flush with the front skin. Likewise, the laminated former made in the previous step is to be installed at the back such that two out of the three foam thicknesses make contact with the fuselage skin: the plane defining the end of the fuselage skin is the same as the plane between the former with the tabs and the rest of the former itself. Tape can be helpful here to pull the sides of the skin parallel while the glue cures.
Next, fold these into the main bulkhead spacer and lower bay door servo cage. Verify the fold direction (A/B) of the former by test-fitting it with its relevant formers.
Next, build up the upper and lower carbo bay doors. The thin middle plate between the upper and lower surface of the lower bay door goes above the bottom plate and underneath the top plate, and the pie-slice sides go up beside them - then, embed a control horn into the foam. Folding on the upper door should be self-explanatory, look at the cutouts at the front for reference. Don't forget the bevel at the back for the hinge point!
Attach the bottom door to the bottom skin - I just CA'd paper to both sides, though something like packing tape may work well here as well. Install the bottom door servo and its cage, hook up the linkage, then run an extension forwards. Also install the two battery tray supports, step facing aft. Set the location of these side to side with the main bulkhead formers.
Build up the cargo bay box with an A fold. Then, install it and the main bulkhead formers into the fuselage: The tabs slot into the rear bulkhead former, the slanted back nests into the formers at the rear of the fuselage.
Finishing the Empennage
Attach the upper cargo bay door to the tail assembly - I'd recommend doing it temporarily at this point. Add a linkage to the door and make sure you've got a decent amount of travel going on: At least 6 inches of deflection at the edge, with 2 inches below parallel with the underside of the existing skin is a good start.
Get the next skin and its stiffeners. Attach the stiffeners from the corners to the center of the inner top skin, then glue it all to the tail assembly, keeping the flaps beside the cargo bay unglued. Verify travel limits of the cargo bay door and tape all the wiring along the inner upper skin.
Finally, install the entire tail/empennage assembly onto the fuselage. Pull the wires through the rear formers, then trim the skirts around the cargo bay door for clearance. Attach the upper bay door permanently if not already done, then roll the paper over the exposed edge of the skirt pieces and glue them into place, flanking the sides of the bay doors.
EDIT: I have experienced problems with the upper cargo bay door fatiguing at the servo horn attach point, catching the airstream, and buckling back into it. The door I built on the prototype has thinner stiffeners than those on the plans but the following couldn't hurt: To fix this, I'd recommend reinforcing the door with barbecue skewers along its length and adding a tab which constrains it against the lower door, as shown below.
Nose
Start with the main former, forehead former, and skins. Assemble as shown, making sure to bevel parts of the skins so they make nice seams. Next, fold up the main nose skin and join the ends into one continuous skin - though leave the gap at the top for the retract strut. Then, glue the two assemblies together, taking care to line everything up.
Next, laminate the next smallest formers. Install them into the nose such that the parting line between the laminates aligns with the foremost of the seam between the windshield and nose skin and 1+1/4" back from the front of the nose skin. Finally, install the next smallest former flush with the front of the nose skin.
Now, assemble the two retract plates. Note that a 5g steering servo is shown here whereas the plans have been updated for wider - I used a ES09MD II after stripping out the original plastic-geared 5g. Glue the top plate with the servo to the retract unit and the servo to the plate and set up the steering linkage. Then, install the entire assembly into the slots in the nose, with the plywood coming foremost to the front of the nose skin and former.
Install the three tapered nose pieces, adding bevels on the backside to give them nice seams.
Glue in the nose gear door servos (I used 5g EMAX ES9051s) and their linkages. I opted for a bit of control horn wire embedded into the foam which rides inside a slot in the servo horn. It took a good bit of fanagling to get the geometry just right. It may be possible to do a purely mechanical system (as will be done on the mains), however for scale accuracy these gear doors should be up only unless the gear is in transit: they can be closed when the gear is down.
Hatch and Battery Tray
Assemble the hatch as shown below. Peel the paper off the locating tabs facing outwards to bond them better to the hatch and pevent any delamination of paper from installation / removal cycles. Also, ensure the partial formers are at least 3/8" back from the edges of the skin on both sides for clearance during installation. Once you're done you can embed magnets into the alignment tabs and fuselage sides to retain the hatch - I used 1/2" (12mm) diameter wafer neodymium magnets.
Take the battery tray, add stiffeners of sorts to the bottom to prevent the battery straps from tearing out the foam (I used strip balsa, something like popsicle sticks would work well here), then smear a layer of hot glue on top for battery adhesion and install the battery straps.
Finally, glue the nose onto the fuselage and install the battery tray. Use the hatch as a spacer to ensure it will fit while the nose is glued on. Pass the wires from the nose down under the battery tray, and remember to install the triangular braces to help with nose gear loading - just make sure the hatch tabs have enough clearance.
Congratulations, you're a good bit of the way there to being done!